Next generation sequencing

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

SNIP-Seq

URL

http://www.stsiweb.org/index.php/infrastructure/software_data/variant_detection_from_population_scale_sequence_data_snip_seq/

Important features

1. It is a tool for discovering SNPs in population sequencing data. 2. It assigns genotype to individuals. 3. It has low false SNP detection rate less than 2%.

Citations

Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA. Accurate detection and genotyping of SNPs utilizing population sequencing data. Genome Res. 2010 Apr;20(4):537-45. Epub 2010 Feb 11. PubMed PMID: 20150320; PubMed Central PMCID: PMC2847757.

Year of publication

2010

Rank by usage frequency

100

Comments

Function

SNP discovery